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• Zhaoqian Su, Saman Alavi, John A. Ripmeester, Gedaliah Wolosh, and Cristiano L. Dias, Methane Clathrate Formation is Catalyzed and Kinetically Inhibited by the Same Molecule: Two Facets of Methanol, J. Phys. Chem. B 125, 4162-4168 (2021).

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• Farbod Mahmoudinobar, Bradley L. Nilsson, and Cristiano L. Dias, Effects of Ions and Small Compounds on the Structure of Aβ42 Monomers, Phys. Chem. B 125, 4, 1085–1097 (2021).

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• Cristiano L. Dias, Sharareh Jalali, Yanxing Yang, and Luis Cruz, Role of Cholesterol on Binding of Amyloid Fibrils to Lipid Bilayers, J. Phys. Chem. B 124:3036-3042 (2020).

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• Zhaoqian Su and Cristiano Dias, Individual and combined effects of urea and trimethylamine N-oxide (TMAO) on protein structures, Journal of Molecular Liquids, 293, 111443 (2019).

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• Farbod Mahmoudinobar and Cristiano Dias, GRADE: A Code to Determine Clathrate Hydrate Structures, accepted for publication in Computer Physics Communications 244:385 (2019) - https://doi.org/10.1016/j.cpc.2019.06.004

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• Farbod Mahmoudinobar, Jennifer Urban, Zhaoqian Su, Bradley Nilsson, and Cristiano Dias, Thermodynamic stability of polar and non-polar amyloid fibrils, Journal of Chemical Theory and Computation 15, 3868 (2019).

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• Young M. Jeong, Cristiano Dias, Casey Diekman, Helene Brochon, Pyonghwa Kim, Manpreet Kaura, Yong-Sung Kim, Hye-In Jang, Yong-Ick Kim, Magnesium regulates the circadian oscillator in cyanobacteria, Journal of Biological Rhythms 34, 380 (2019).

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• Tomaz Urbic and Cristiano L. Dias, Thermodynamic properties of amyloid fibrils: A simple model of peptide aggregation, Fluid Phase Equilibria 489, 104 (2019).

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• J.S.Espinoza Ortiz, and C.L.Dias, Cooperative fibril model: Native, amyloid-like fibril, and unfolded states of proteins, Physica A 511, 154–165 (2018).

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• Zhaoqian Su, Gopal Ravindhran, and Cristiano Dias, Effects of Trimethylamine-N-oxide (TMAO) on hydrophobic and charged interactions, J. Phys. Chem. B 122, 5557 (2018).

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• Zhaoqian Su, Farbod Mahmoudinobar, and Cristiano Dias, Role of TMAO on the conformation of peptides and its implication for proteins, Phys. Rev. Letters 119, 108102 (2017), Editor's suggestion​.​

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• Zhaoqian Su and Cristiano L. Dias, Molecular mechanism of protein unfolding by urea, Journal of Molecular Liquids 228, 168-175 (2017).

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• Tomaz Urbic, Sara Nadem and Cristiano L. Dias, Thermodynamic properties of amyloid fibrils in equilibrium, Biophysical Chemistry 231,155  (2017).

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• Srinivasa R. Jampani, Farbood Mahmoudinobar, Zhaoqian Su and Cristiano L. Dias, Thermodynamics of Abeta16-21 dissociation from a fibril, PROTEIN: Structure, Function, and Bioinformatics 83:1963–1972 (2015). 

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• Farbood Mahmoudinobar, Cristiano L. Dias*, and Ronen Zangi, Role of side-chain interactions on the formation of alpha-helices in model peptides, Phys. Rev. E 91, 032710 (2015).

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• Cristiano L. Dias and Hue Sun Chan. Pressure-Dependence Properties of Elementary Hydrophobic Interactions: Ramifications for Activation Properties of Protein Folding. J. Phys. Chem. B 118 , 7488 (2014).

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• Tomaz Urbic and Cristiano L. Dias. Hydration of non-polar anti-parallel beta-sheets. J. Chem. Phys. 140, 165101 (2014).

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• Tomaz Urbic and Cristiano L. Dias. Properties of Lennard-Jones dimeric fluid in two dimensions: An integral equation study. J. Chem. Phys. 140, 094703 (2014).

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• Chitra Narayanan and Cristiano L. Dias. Exploring the free energy landscape of a model beta-hairpin peptide and its isoform.  PROTEIN: Structure, Function, and Bioinformatics 82, 2394 (2014).

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• Zhaoqian Su and Cristiano L. Dias. Driving beta-strands into fibrils.  J. Phys. Chem. B 118, 10830 (2014). 

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• Chitra Narayanan and Cristiano L. Dias. Hydrophobic interactions and hydrogen bonds in beta-sheet formation.  J. Chem. Phys. 139, 115103 (2013).

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• Cristiano L. Dias. Unifying microscopic mechanism for pressure and cold denaturations of proteins, Physical Review letter 109, 048104 (2012) [supplemental material].

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• T. Hynninen, C.L. Dias, A. Mkrtchyan, V. Heinonen, M. Karttunen, A.S. Foster, and T. Ala-Nissila. A molecular dynamics implementation of the 3D Mercedes-Benz water model, Computer Physics Communication 183, 363 (2012). 

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• Cristiano L. Dias, Mikko Karttunen and Hue Sun Chan. Hydrophobic interactions in the formation of secondary structures in small peptides, Physical Review E 84, 041931 (2011).  

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• Cristiano L. Dias, Teemu Hynninen, Tapio Ala-Nissila, Adam S. Foster and Mikko Karttunen. Hydrophobicity within the three-dimensional Mercedes-Benz model: Potential of mean force, J. Chem. Phys. 134, 65106 (2011). 

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• Teemu Hynninen, Vili Heinonen, Cristiano L. Dias, Mikko Karttunen, Adam S. Foster and Tapio Ala-Nissila. Cutting Ice: Nanowire Regelation, Physical Review Letters 105, 086102 (2010). 

      See also Physorg. 

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• Jirasak Wong-Ekkabut, M. Miettinen, Cristiano L. Dias and Mikko Kartunnen. Static charges cannot drive a continuous flow of water molecules through a carbon nanotube, Nature Nanotechnology 5, 555 (2010). 

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• Cristiano L. Dias, Tapio Ala-Nissila, Jirasak Wong-ekkabut, Ilpo Vattulainen, Martin Grant and Mikko Karttunen. Reply to the comment by Graziano on The hydrophobic effect and its role in cold denaturation, Cryobiology 60, 356 (2010). 

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• Cristiano L. Dias, Tapio Ala-Nissila, Jirasak Wong-ekkabut, Ilpo Vattulainen, Martin Grant and Mikko Karttunen. The hydrophobic effect and its role in cold denaturation. Cryobiology 60, 91 (2010).

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• Cristiano L. Dias, Jens Kroger, Daniel Vernon and Martin Grant. Nucleation of cracks in a brittle sheet.  Physical Review E 80, 066109 (2009). 

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• Cristiano L. Dias, Tapio Ala-Nissila, Martin Grant and Mikko Karttunen. Three-dimensional "Mercedes-Benz" model for water. J. Chem. Phys. 131, 054505 (2009). 

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• Xavier Urli, Cristiano L. Dias, Laurent J. Lewis, and Sjoerd Roorda. Point defects in pure amorphous silicon and their role in structural relaxation: A tight-binding molecular-dynamics study. Physical Review B 77, 155204 (2008). 

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• Cristiano L. Dias, Tapio Ala-Nissila, Mikko Karttunen, Ilpo Vattulainen, and Martin Grant. Microscopic mechanism for cold denaturation.  Physical Review Letters 100, 118101 (2008).

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• Anirban Sain, Cristiano L. Dias, and Martin Grant. Rupture of an extended object: A many-body Kramers calculation. Physical Review E 74, 046111 (2006).

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• C. L. Dias and Martin Grant. Unfolding designable structures. The European Physical Journal B 50, 265 (2006). 

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• Cristiano L. Dias and Martin Grant. Designable structures are easy to unfold. Physical Review E 74, 042902 (2006). 

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• Cristiano L. Dias, Martin Dube, Fernando Oliveira, and Martin Grant. Scaling in Force Spectroscopy. Physical Review E 72, 011918 (2005).

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